sureprint g3 human 1×1m microarray  (Agilent technologies)

Journal: iScience

Article Title: Genome-wide study of copy number variation implicates multiple novel loci for schizophrenia risk in Han Chinese family trios

doi: 10.1016/j.isci.2021.102894

Figure Lengend Snippet:

Article Snippet: Genomic DNA (gDNA) from the peripheral blood of the subjects were extracted using QIAamp DNA Blood Kits (Qiagen, Valencia, CA, USA) and then performed array comparative genomic hybridization (aCGH) using 1 × 1M SurePrint G3 Human CGH Microarray (Design ID: 021529, hg19; Agilent, Santa Clara, CA, USA) according to the manufacturer's instructions.

Techniques: Microarray, DNA Labeling, Hybridization, Real-time Polymerase Chain Reaction, Software

Journal: Nucleic Acids Research

Article Title: Profiling of promoter occupancy by the SND1 transcriptional coactivator identifies downstream glycerolipid metabolic genes involved in TNFα response in human hepatoma cells

doi: 10.1093/nar/gkv858

Figure Lengend Snippet: Analysis of SND1 binding regions. HepG2 cells were treated with TNFα (50 ng/ml, 24 h) or left untreated (control) before performing ChIP-chip analysis for SND1 binding. ( A ) Bound probes and Venn diagrams of the corresponding genes. ( B ) Identification of the genomic location of SND1 binding regions using PinkThing. ( C ) Positional distribution of the identified SND1 binding regions relative to the 5′ end in control and TNFα-treated cells. Graphs (B and C) are representative of three experiments with similar results.

Article Snippet: Labeled nucleotides were hybridized to Agilent SurePrint G3 Human Promoter ChIP-chip Microarray 1 × 1M, Agilent Microarray Desing ID 027811 p/n G4873A.

Techniques: Binding Assay, ChIP-chip